A0A150USA4 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A150USA4

Uncharacterized protein. (817 aa)

Predicted Functional Partners:

A0A150V7C1

0.821

A0A150UPI4

0.765

A0A150UYQ6

0.701

A0A150UV57

0.620

A0A150UY66

0.617

A0A150V171

0.610

A0A150V8W5

0.608

A0A150VFX9

0.592

A0A150VCN1

0.591

A0A150VEG2

0.580

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A150UPI4	A0A150USA4	Uncharacterized protein.	Uncharacterized protein.	0.765
A0A150UPI4	A0A150UV57	Uncharacterized protein.	Uncharacterized protein.	0.995
A0A150UPI4	A0A150UY66	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A150UPI4	A0A150UYQ6	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.999
A0A150UPI4	A0A150V171	Uncharacterized protein.	Uncharacterized protein.	0.946
A0A150UPI4	A0A150V7C1	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A150UPI4	A0A150V8W5	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.999
A0A150UPI4	A0A150VCN1	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.999
A0A150UPI4	A0A150VEG2	Uncharacterized protein.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.997
A0A150UPI4	A0A150VFX9	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.999
A0A150USA4	A0A150UPI4	Uncharacterized protein.	Uncharacterized protein.	0.765
A0A150USA4	A0A150UV57	Uncharacterized protein.	Uncharacterized protein.	0.620
A0A150USA4	A0A150UY66	Uncharacterized protein.	Uncharacterized protein.	0.617
A0A150USA4	A0A150UYQ6	Uncharacterized protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.701
A0A150USA4	A0A150V171	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A150USA4	A0A150V7C1	Uncharacterized protein.	Uncharacterized protein.	0.821
A0A150USA4	A0A150V8W5	Uncharacterized protein.	zf-CHCC domain-containing protein.	0.608
A0A150USA4	A0A150VCN1	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.591
A0A150USA4	A0A150VEG2	Uncharacterized protein.	Complex1_49kDa domain-containing protein; Belongs to the complex I 49 kDa subunit family.	0.580
A0A150USA4	A0A150VFX9	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.592