A0A150USL8 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A150USL8

Uncharacterized protein. (740 aa)

Predicted Functional Partners:

A0A150VBI0

0.872

A0A150V6C3

0.871

A0A150VHM5

0.831

A0A150UYK2

0.825

A0A150V546

0.817

A0A150VF50

0.794

A0A150VJ55

0.788

A0A150US51

0.777

A0A150V142

0.769

A0A150V4I8

0.769

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A150US51	A0A150USL8	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.777
A0A150US51	A0A150VBI0	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein.	0.730
A0A150US51	A0A150VF50	Uncharacterized protein; Belongs to the actin family.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.996
A0A150US51	A0A150VJ55	Uncharacterized protein; Belongs to the actin family.	Uncharacterized protein; Belongs to the actin family.	0.976
A0A150USL8	A0A150US51	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.777
A0A150USL8	A0A150UYK2	Uncharacterized protein.	HORMA domain-containing protein.	0.825
A0A150USL8	A0A150V142	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.769
A0A150USL8	A0A150V4I8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.769
A0A150USL8	A0A150V546	Uncharacterized protein.	Uncharacterized protein.	0.817
A0A150USL8	A0A150V6C3	Uncharacterized protein.	Serine/threonine-protein kinase.	0.871
A0A150USL8	A0A150VBI0	Uncharacterized protein.	Uncharacterized protein.	0.872
A0A150USL8	A0A150VF50	Uncharacterized protein.	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes.	0.794
A0A150USL8	A0A150VHM5	Uncharacterized protein.	Uncharacterized protein.	0.831
A0A150USL8	A0A150VJ55	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.788
A0A150UYK2	A0A150USL8	HORMA domain-containing protein.	Uncharacterized protein.	0.825
A0A150UYK2	A0A150V142	HORMA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.975
A0A150UYK2	A0A150V4I8	HORMA domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.984
A0A150UYK2	A0A150V6C3	HORMA domain-containing protein.	Serine/threonine-protein kinase.	0.953
A0A150UYK2	A0A150VBI0	HORMA domain-containing protein.	Uncharacterized protein.	0.545
A0A150UYK2	A0A150VHM5	HORMA domain-containing protein.	Uncharacterized protein.	0.632