A0A150USS8 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A150USS8

Peptidase S53 domain-containing protein. (587 aa)

Predicted Functional Partners:

A0A150V7M3

0.874

A0A150UUX6

0.513

A0A150VAQ4

0.511

A0A150VA05

0.496

A0A150UXI5

0.493

A0A150UQ75

0.491

A0A150V0L0

0.491

A0A150V8J4

0.474

A0A150V0K7

0.470

A0A150VEP0

0.451

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A150UQ75	A0A150USS8	Uncharacterized protein; Belongs to the SKP1 family.	Peptidase S53 domain-containing protein.	0.491
A0A150UQ75	A0A150UUX6	Uncharacterized protein; Belongs to the SKP1 family.	MPN domain-containing protein.	0.807
A0A150UQ75	A0A150UXI5	Uncharacterized protein; Belongs to the SKP1 family.	Ubiquitin-like domain-containing protein.	0.560
A0A150UQ75	A0A150VEP0	Uncharacterized protein; Belongs to the SKP1 family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.672
A0A150USS8	A0A150UQ75	Peptidase S53 domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.491
A0A150USS8	A0A150UUX6	Peptidase S53 domain-containing protein.	MPN domain-containing protein.	0.513
A0A150USS8	A0A150UXI5	Peptidase S53 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.493
A0A150USS8	A0A150V0K7	Peptidase S53 domain-containing protein.	Uncharacterized protein.	0.470
A0A150USS8	A0A150V0L0	Peptidase S53 domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.491
A0A150USS8	A0A150V7M3	Peptidase S53 domain-containing protein.	Uncharacterized protein.	0.874
A0A150USS8	A0A150V8J4	Peptidase S53 domain-containing protein.	Uncharacterized protein.	0.474
A0A150USS8	A0A150VA05	Peptidase S53 domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.496
A0A150USS8	A0A150VAQ4	Peptidase S53 domain-containing protein.	Uncharacterized protein.	0.511
A0A150USS8	A0A150VEP0	Peptidase S53 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.451
A0A150UUX6	A0A150UQ75	MPN domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.807
A0A150UUX6	A0A150USS8	MPN domain-containing protein.	Peptidase S53 domain-containing protein.	0.513
A0A150UUX6	A0A150UXI5	MPN domain-containing protein.	Ubiquitin-like domain-containing protein.	0.766
A0A150UUX6	A0A150V0L0	MPN domain-containing protein.	Uncharacterized protein; Belongs to the SKP1 family.	0.807
A0A150UUX6	A0A150VA05	MPN domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.548
A0A150UUX6	A0A150VEP0	MPN domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.684