M433DRAFT_7678 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M433DRAFT_7678

Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)

Predicted Functional Partners:

A0A150V1N2

0.570

A0A150V9L9

0.570

A0A150V5P7

0.561

A0A150UU23

0.533

A0A150VBH5

0.514

A0A150V427

0.505

M433DRAFT_820

0.489

M433DRAFT_6547

0.486

A0A150V6H8

0.478

A0A150V5F1

0.467

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A150UU23	A0A150V1N2	A0A150UU23	A0A150V1N2	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Lactamase_B domain-containing protein.	0.812
A0A150UU23	A0A150V5P7	A0A150UU23	A0A150V5P7	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.534
A0A150UU23	A0A150V9L9	A0A150UU23	A0A150V9L9	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	2Fe-2S ferredoxin-type domain-containing protein.	0.812
A0A150UU23	M433DRAFT_7678	A0A150UU23	A0A150UTY1	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.533
A0A150UU23	M433DRAFT_820	A0A150UU23	A0A150VGX0	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	MaoC-like domain-containing protein.	0.478
A0A150V1N2	A0A150UU23	A0A150V1N2	A0A150UU23	Lactamase_B domain-containing protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.812
A0A150V1N2	M433DRAFT_6547	A0A150V1N2	A0A150UY13	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.519
A0A150V1N2	M433DRAFT_7678	A0A150V1N2	A0A150UTY1	Lactamase_B domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.570
A0A150V1N2	M433DRAFT_820	A0A150V1N2	A0A150VGX0	Lactamase_B domain-containing protein.	MaoC-like domain-containing protein.	0.426
A0A150V427	A0A150V5P7	A0A150V427	A0A150V5P7	PKS_AT domain-containing protein.	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.996
A0A150V427	M433DRAFT_6547	A0A150V427	A0A150UY13	PKS_AT domain-containing protein.	Uncharacterized protein.	0.456
A0A150V427	M433DRAFT_7678	A0A150V427	A0A150UTY1	PKS_AT domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.505
A0A150V427	M433DRAFT_820	A0A150V427	A0A150VGX0	PKS_AT domain-containing protein.	MaoC-like domain-containing protein.	0.536
A0A150V5F1	A0A150V6H8	A0A150V5F1	A0A150V6H8	Pex14_N domain-containing protein.	Pex2_Pex12 domain-containing protein.	0.935
A0A150V5F1	A0A150VBH5	A0A150V5F1	A0A150VBH5	Pex14_N domain-containing protein.	TPR_REGION domain-containing protein.	0.994
A0A150V5F1	M433DRAFT_6547	A0A150V5F1	A0A150UY13	Pex14_N domain-containing protein.	Uncharacterized protein.	0.681
A0A150V5F1	M433DRAFT_7678	A0A150V5F1	A0A150UTY1	Pex14_N domain-containing protein.	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.467
A0A150V5F1	M433DRAFT_820	A0A150V5F1	A0A150VGX0	Pex14_N domain-containing protein.	MaoC-like domain-containing protein.	0.654
A0A150V5P7	A0A150UU23	A0A150V5P7	A0A150UU23	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.534
A0A150V5P7	A0A150V427	A0A150V5P7	A0A150V427	3-oxoacyl-[acyl-carrier-protein] synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	PKS_AT domain-containing protein.	0.996