A0A150VA69 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A150VA69

BHLH domain-containing protein. (287 aa)

Predicted Functional Partners:

A0A150VGM6

0.834

M433DRAFT_415

0.834

M433DRAFT_7182

0.808

M433DRAFT_6987

0.625

A0A150UYS0

0.591

A0A150UZI6

0.591

A0A150VFV2

0.591

M433DRAFT_2980

0.547

A0A150VA67

0.547

A0A150VH23

0.547

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A150UYS0	A0A150VA69	A0A150UYS0	A0A150VA69	BHLH domain-containing protein.	BHLH domain-containing protein.	0.591
A0A150UZI6	A0A150VA69	A0A150UZI6	A0A150VA69	BHLH domain-containing protein.	BHLH domain-containing protein.	0.591
A0A150VA67	A0A150VA69	A0A150VA67	A0A150VA69	Uncharacterized protein.	BHLH domain-containing protein.	0.547
A0A150VA69	A0A150UYS0	A0A150VA69	A0A150UYS0	BHLH domain-containing protein.	BHLH domain-containing protein.	0.591
A0A150VA69	A0A150UZI6	A0A150VA69	A0A150UZI6	BHLH domain-containing protein.	BHLH domain-containing protein.	0.591
A0A150VA69	A0A150VA67	A0A150VA69	A0A150VA67	BHLH domain-containing protein.	Uncharacterized protein.	0.547
A0A150VA69	A0A150VFV2	A0A150VA69	A0A150VFV2	BHLH domain-containing protein.	Uncharacterized protein.	0.591
A0A150VA69	A0A150VGM6	A0A150VA69	A0A150VGM6	BHLH domain-containing protein.	SSD domain-containing protein.	0.834
A0A150VA69	A0A150VH23	A0A150VA69	A0A150VH23	BHLH domain-containing protein.	Uncharacterized protein.	0.547
A0A150VA69	M433DRAFT_2980	A0A150VA69	A0A150V9U7	BHLH domain-containing protein.	Uncharacterized protein.	0.547
A0A150VA69	M433DRAFT_415	A0A150VA69	A0A150VI64	BHLH domain-containing protein.	SSD domain-containing protein.	0.834
A0A150VA69	M433DRAFT_6987	A0A150VA69	A0A150UW86	BHLH domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.625
A0A150VA69	M433DRAFT_7182	A0A150VA69	A0A150UWC2	BHLH domain-containing protein.	Importin N-terminal domain-containing protein.	0.808
A0A150VFV2	A0A150VA69	A0A150VFV2	A0A150VA69	Uncharacterized protein.	BHLH domain-containing protein.	0.591
A0A150VGM6	A0A150VA69	A0A150VGM6	A0A150VA69	SSD domain-containing protein.	BHLH domain-containing protein.	0.834
A0A150VH23	A0A150VA69	A0A150VH23	A0A150VA69	Uncharacterized protein.	BHLH domain-containing protein.	0.547
M433DRAFT_2980	A0A150VA69	A0A150V9U7	A0A150VA69	Uncharacterized protein.	BHLH domain-containing protein.	0.547
M433DRAFT_415	A0A150VA69	A0A150VI64	A0A150VA69	SSD domain-containing protein.	BHLH domain-containing protein.	0.834
M433DRAFT_6987	A0A150VA69	A0A150UW86	A0A150VA69	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	BHLH domain-containing protein.	0.625
M433DRAFT_6987	M433DRAFT_7182	A0A150UW86	A0A150UWC2	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin N-terminal domain-containing protein.	0.992