A0A150VAY1 protein (Acidomyces richmondensis)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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[Homology]

Score

A0A150VAY1

Uncharacterized protein. (680 aa)

Predicted Functional Partners:

A0A150VIS8

0.690

A0A150V3Y6

0.674

M433DRAFT_2961

0.665

M433DRAFT_1914

0.648

M433DRAFT_3643

0.642

A0A150VA07

0.640

A0A150VJK7

0.625

A0A150V025

0.615

A0A150V7K8

0.598

A0A150V7R9

0.598

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A150V025	A0A150VAY1	A0A150V025	A0A150VAY1	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.615
A0A150V3Y6	A0A150V7K8	A0A150V3Y6	A0A150V7K8	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.983
A0A150V3Y6	A0A150V7R9	A0A150V3Y6	A0A150V7R9	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A150V3Y6	A0A150VA07	A0A150V3Y6	A0A150VA07	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.979
A0A150V3Y6	A0A150VAY1	A0A150V3Y6	A0A150VAY1	Uncharacterized protein.	Uncharacterized protein.	0.674
A0A150V3Y6	A0A150VJK7	A0A150V3Y6	A0A150VJK7	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.963
A0A150V3Y6	M433DRAFT_3643	A0A150V3Y6	A0A150V7Y5	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.973
A0A150V7K8	A0A150V3Y6	A0A150V7K8	A0A150V3Y6	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.983
A0A150V7K8	A0A150V7R9	A0A150V7K8	A0A150V7R9	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.873
A0A150V7K8	A0A150VA07	A0A150V7K8	A0A150VA07	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D2.	0.999
A0A150V7K8	A0A150VAY1	A0A150V7K8	A0A150VAY1	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Uncharacterized protein.	0.598
A0A150V7K8	A0A150VJK7	A0A150V7K8	A0A150VJK7	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
A0A150V7K8	M433DRAFT_3643	A0A150V7K8	A0A150V7Y5	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
A0A150V7R9	A0A150V3Y6	A0A150V7R9	A0A150V3Y6	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A150V7R9	A0A150V7K8	A0A150V7R9	A0A150V7K8	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.873
A0A150V7R9	A0A150VA07	A0A150V7R9	A0A150VA07	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.991
A0A150V7R9	A0A150VAY1	A0A150V7R9	A0A150VAY1	Uncharacterized protein.	Uncharacterized protein.	0.598
A0A150V7R9	A0A150VJK7	A0A150V7R9	A0A150VJK7	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.991
A0A150V7R9	M433DRAFT_3643	A0A150V7R9	A0A150V7Y5	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.990
A0A150VA07	A0A150V3Y6	A0A150VA07	A0A150V3Y6	Small nuclear ribonucleoprotein Sm D2.	Uncharacterized protein.	0.979

page 1 of 3

Network Stats

number of nodes:

3

number of edges:

3

average node degree:

2

avg. local clustering coefficient:

1

expected number of edges:

2

PPI enrichment p-value:

0.213

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006099

Tricarboxylic acid cycle

4 of 21

1.73

1.67

0.00022

GO:0006090

Pyruvate metabolic process

4 of 23

1.69

1.64

0.00022

GO:0006091

Generation of precursor metabolites and energy

8 of 137

1.22

1.47

3.30e-06

GO:0005975

Carbohydrate metabolic process

6 of 98

1.24

1.26

0.00012

GO:0006096

Glycolytic process

3 of 16

1.73

1.19

0.0036

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0046912

Acyltransferase activity, acyl groups converted into alkyl on transfer

2 of 2

2.45

0.99

0.0155

GO:0004611

Phosphoenolpyruvate carboxykinase activity

2 of 2

2.45

0.99

0.0155

GO:0046872

Metal ion binding

8 of 431

0.72

0.49

0.0108

GO:0043167

Ion binding

9 of 831

0.49

0.32

0.0305

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:36747056

(2023) Complex regulation in a Comamonas platform for diverse aromatic carbon metabolism.

3 of 9

1.98

1.53

0.00094

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1873

Mixed, incl. Carbon metabolism, and Branched-chain amino acid biosynthetic process

9 of 118

1.34

2.03

7.89e-09

CL:1877

Citrate cycle (TCA cycle), and 3Fe-4S

4 of 25

1.66

1.59

0.00026

CL:1876

Citrate cycle (TCA cycle), and Alanine, aspartate and glutamate metabolism

5 of 46

1.49

1.56

0.00011

CL:2062

Glycolysis

3 of 10

1.93

1.5

0.0010

CL:1874

Mixed, incl. Citrate cycle (TCA cycle), and Alpha-amino acid metabolic process

6 of 92

1.27

1.3

0.00011

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00680

Methane metabolism

5 of 29

1.69

2.34

1.52e-06

map00010

Glycolysis / Gluconeogenesis

5 of 33

1.63

2.21

2.18e-06

map01200

Carbon metabolism

9 of 114

1.35

2.19

6.25e-10

map00620

Pyruvate metabolism

6 of 53

1.51

2.12

6.13e-07

map01120

Microbial metabolism in diverse environments

11 of 288

1.04

1.36

6.25e-10

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0324

Glycolysis

3 of 9

1.98

1.44

0.0015

KW-0670

Pyruvate

3 of 12

1.85

1.39

0.0015

KW-0816

Tricarboxylic acid cycle

3 of 13

1.82

1.38

0.0015

KW-0460

Magnesium

5 of 89

1.2

1.0

0.0015

KW-0418

Kinase

4 of 86

1.12

0.77

0.0080

(more ...)

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR015813

Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily

3 of 8

2.03

1.14

0.0065

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