M433DRAFT_2260 protein (Acidomyces richmondensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

M433DRAFT_2260

NTP_transf_9 domain-containing protein. (299 aa)

Predicted Functional Partners:

A0A150VAW8

0.946

A0A150VJ77

0.944

A0A150V8E8

0.884

A0A150V9Y7

0.861

A0A150VH17

0.861

LSM4

0.832

A0A150USP0

0.821

A0A150UUF5

0.821

LSM3

0.814

LSM1

0.794

Your Current Organism:

Acidomyces richmondensis

NCBI taxonomy Id: 766039
Other names: A. richmondensis BFW, Acidomyces richmondensis BFW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A150USP0	A0A150UUF5	A0A150USP0	A0A150UUF5	Uncharacterized protein.	XRN_N domain-containing protein.	0.933
A0A150USP0	A0A150V8E8	A0A150USP0	A0A150V8E8	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.599
A0A150USP0	A0A150V9Y7	A0A150USP0	A0A150V9Y7	Uncharacterized protein.	Uncharacterized protein.	0.774
A0A150USP0	A0A150VAW8	A0A150USP0	A0A150VAW8	Uncharacterized protein.	Uncharacterized protein.	0.971
A0A150USP0	A0A150VH17	A0A150USP0	A0A150VH17	Uncharacterized protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.613
A0A150USP0	A0A150VJ77	A0A150USP0	A0A150VJ77	Uncharacterized protein.	PAT1 domain-containing protein.	0.928
A0A150USP0	LSM1	A0A150USP0	A0A150UZC0	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.862
A0A150USP0	LSM3	A0A150USP0	A0A150UY81	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.926
A0A150USP0	LSM4	A0A150USP0	A0A150V7D1	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.756
A0A150USP0	M433DRAFT_2260	A0A150USP0	A0A150VCA4	Uncharacterized protein.	NTP_transf_9 domain-containing protein.	0.821
A0A150UUF5	A0A150USP0	A0A150UUF5	A0A150USP0	XRN_N domain-containing protein.	Uncharacterized protein.	0.933
A0A150UUF5	A0A150V8E8	A0A150UUF5	A0A150V8E8	XRN_N domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.599
A0A150UUF5	A0A150V9Y7	A0A150UUF5	A0A150V9Y7	XRN_N domain-containing protein.	Uncharacterized protein.	0.774
A0A150UUF5	A0A150VAW8	A0A150UUF5	A0A150VAW8	XRN_N domain-containing protein.	Uncharacterized protein.	0.971
A0A150UUF5	A0A150VH17	A0A150UUF5	A0A150VH17	XRN_N domain-containing protein.	NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX.	0.613
A0A150UUF5	A0A150VJ77	A0A150UUF5	A0A150VJ77	XRN_N domain-containing protein.	PAT1 domain-containing protein.	0.928
A0A150UUF5	LSM1	A0A150UUF5	A0A150UZC0	XRN_N domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.	0.862
A0A150UUF5	LSM3	A0A150UUF5	A0A150UY81	XRN_N domain-containing protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.926
A0A150UUF5	LSM4	A0A150UUF5	A0A150V7D1	XRN_N domain-containing protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.756
A0A150UUF5	M433DRAFT_2260	A0A150UUF5	A0A150VCA4	XRN_N domain-containing protein.	NTP_transf_9 domain-containing protein.	0.821