STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718085_01319Unannotated protein. (446 aa)    
Predicted Functional Partners:
GCA_000718085_02609
Unannotated protein.
 
     0.739
GCA_000718085_02388
Unannotated protein.
 
    
 0.655
GCA_000718085_02389
Unannotated protein.
 
    
 0.580
GCA_000718085_03117
Unannotated protein.
  
   
 0.478
GCA_000718085_02211
Unannotated protein.
 
    0.471
GCA_000718085_01701
Unannotated protein.
 
  
  0.465
GCA_000718085_02210
Unannotated protein.
 
     0.415
Your Current Organism:
Mycetocola saprophilus
NCBI taxonomy Id: 76636
Other names: DSM 15178, Detolaasinbacter shiratae, IFO 16274, JCM 11655, M. saprophilus, MAFF 211324, Mycetocola saprophilus Tsukamoto et al. 2001, NBRC 16274, NRRL B-24119, strain CM-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.