STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000718085_02110Unannotated protein. (638 aa)    
Predicted Functional Partners:
GCA_000718085_00734
Unannotated protein.
   
  
 0.776
GCA_000718085_01679
Unannotated protein.
  
  
 0.724
GCA_000718085_00021
Unannotated protein.
  
  
 0.703
GCA_000718085_01364
Unannotated protein.
   
    0.672
GCA_000718085_00632
Unannotated protein.
      
 0.591
GCA_000718085_02109
Unannotated protein.
  
    0.591
GCA_000718085_01626
Unannotated protein.
   
    0.587
GCA_000718085_01589
Unannotated protein.
  
    0.569
GCA_000718085_01591
Unannotated protein.
   
    0.562
GCA_000718085_01583
Unannotated protein.
  
  
0.560
Your Current Organism:
Mycetocola saprophilus
NCBI taxonomy Id: 76636
Other names: DSM 15178, Detolaasinbacter shiratae, IFO 16274, JCM 11655, M. saprophilus, MAFF 211324, Mycetocola saprophilus Tsukamoto et al. 2001, NBRC 16274, NRRL B-24119, strain CM-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.