STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_01335FliA/WhiG family RNA polymerase sigma 28 subunit. (387 aa)    
Predicted Functional Partners:
C357_12824
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
   
 0.999
rpsS
COG0185 Ribosomal protein S19.
    
  0.996
rpsI
COG0103 Ribosomal protein S9.
   
 0.992
rpsL
COG0048 Ribosomal protein S12.
    
 0.992
rplD
COG0088 Ribosomal protein L4.
    
 0.990
rpsE
COG0098 Ribosomal protein S5.
    
 0.990
rpsD
COG0522 Ribosomal protein S4 and related proteins.
  
 0.990
rpsO
COG0184 Ribosomal protein S15P/S13E.
   
 0.990
rpsF
COG0360 Ribosomal protein S6.
  
  0.989
rpsR
COG0238 Ribosomal protein S18.
    
  0.989
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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