Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C357_03475COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit. (770 aa)    
Predicted Functional Partners:
C357_06042
DNA topoisomerase IV subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
 0.999
gyrB
DNA gyrase subunit B; COG0187 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit.
 0.998
C357_12699
COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.
  
  
0.909
C357_22195
MotA/TolQ/ExbB proton channel family protein.
   
 
 0.805
C357_13183
COG3024 Uncharacterized protein conserved in bacteria.
    
 
 0.800
C357_12824
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
  
 
 0.694
C357_03470
COG4269 Predicted membrane protein.
       0.693
rpsO
COG0184 Ribosomal protein S15P/S13E.
   
 
 0.678
C357_09154
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
 
  
 0.652
uvrA
COG0178 Excinuclease ATPase subunit.
 
   
 0.635
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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