STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thyXCOG1351 Predicted alternative thymidylate synthase. (305 aa)    
Predicted Functional Partners:
C357_13502
COG0125 Thymidylate kinase.
    
 0.961
glyA
COG0112 Glycine/serine hydroxymethyltransferase.
   
 0.938
C357_08251
Non-ribosomal peptide synthetase; COG0223 Methionyl-tRNA formyltransferase.
   
 0.933
C357_04914
Hypothetical protein; COG0756 dUTPase.
    
 0.928
C357_10682
COG1435 Thymidine kinase.
    
 0.915
C357_04187
COG0190 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase.
    
 0.912
metH
COG0646 Methionine synthase I (cobalamin-dependent), methyltransferase domain.
    
 0.912
C357_10602
COG0299 Folate-dependent phosphoribosylglycinamide formyltransferase PurN.
   
 
 0.910
C357_08541
COG0223 Methionyl-tRNA formyltransferase.
     
 0.905
purH
Bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; COG0138 AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful).
     
 0.905
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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