STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_05433COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog. (184 aa)    
Predicted Functional Partners:
C357_05423
Two-component response regulator; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
 
 
 0.963
C357_05438
Sensor histidine kinase, putative; COG3920 Signal transduction histidine kinase.
 
   
 0.947
C357_12824
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
    
 0.866
rpoB
COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
    
 0.827
C357_05428
Hypothetical protein.
       0.819
C357_19506
COG1758 DNA-directed RNA polymerase, subunit K/omega.
    
 0.733
C357_18876
COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD subunit.
    
 0.718
C357_16386
Signal transduction histidine kinase with CheB and CheR activity; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
   
 0.700
C357_11269
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
   
 0.683
C357_09737
anti-ECFsigma factor, ChrR; COG3806 Anti-sigma factor.
 
 
 
 0.642
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.