C357_06339 protein (Citreicella sp. 357) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C357_06339

Aminotransferase class V; COG0520 Selenocysteine lyase. (491 aa)

Predicted Functional Partners:

C357_21282

0.969

C357_01725

0.915

C357_08890

0.847

C357_10582

0.836

C357_06334

0.820

C357_08865

0.798

C357_08895

0.788

C357_06344

0.750

C357_06329

0.747

C357_06314

0.724

Your Current Organism:

Citreicella sp. 357

NCBI taxonomy Id: 766499
Other names: C. sp. 357

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C357_01725	C357_06339	PP-loop protein; COG0037 Predicted ATPase of the superfamily implicated in cell cycle control.	Aminotransferase class V; COG0520 Selenocysteine lyase.	0.915
C357_01725	C357_10582	PP-loop protein; COG0037 Predicted ATPase of the superfamily implicated in cell cycle control.	COG2166 SufE protein probably involved in Fe-S center assembly.	0.709
C357_01725	C357_21282	PP-loop protein; COG0037 Predicted ATPase of the superfamily implicated in cell cycle control.	Hypothetical protein; COG0822 NifU homolog involved in Fe-S cluster formation.	0.737
C357_06314	C357_06329	Dehydrogenase, putative.	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	0.950
C357_06314	C357_06334	Dehydrogenase, putative.	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	0.829
C357_06314	C357_06339	Dehydrogenase, putative.	Aminotransferase class V; COG0520 Selenocysteine lyase.	0.724
C357_06314	C357_06344	Dehydrogenase, putative.	COG1522 Transcriptional regulators.	0.536
C357_06329	C357_06314	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	Dehydrogenase, putative.	0.950
C357_06329	C357_06334	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	0.731
C357_06329	C357_06339	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	Aminotransferase class V; COG0520 Selenocysteine lyase.	0.747
C357_06329	C357_06344	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	COG1522 Transcriptional regulators.	0.465
C357_06334	C357_06314	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	Dehydrogenase, putative.	0.829
C357_06334	C357_06329	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	0.731
C357_06334	C357_06339	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	Aminotransferase class V; COG0520 Selenocysteine lyase.	0.820
C357_06334	C357_06344	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	COG1522 Transcriptional regulators.	0.546
C357_06339	C357_01725	Aminotransferase class V; COG0520 Selenocysteine lyase.	PP-loop protein; COG0037 Predicted ATPase of the superfamily implicated in cell cycle control.	0.915
C357_06339	C357_06314	Aminotransferase class V; COG0520 Selenocysteine lyase.	Dehydrogenase, putative.	0.724
C357_06339	C357_06329	Aminotransferase class V; COG0520 Selenocysteine lyase.	Oxidoreductase, putative; COG2072 Predicted flavoprotein involved in K+ transport.	0.747
C357_06339	C357_06334	Aminotransferase class V; COG0520 Selenocysteine lyase.	NreB protein, putative; COG0477 Permeases of the major facilitator superfamily.	0.820
C357_06339	C357_06344	Aminotransferase class V; COG0520 Selenocysteine lyase.	COG1522 Transcriptional regulators.	0.750