STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_07641Phospho-2-dehydro-3-deoxyheptonate aldolase; COG3200 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase. (446 aa)    
Predicted Functional Partners:
aroB
COG0337 3-dehydroquinate synthetase.
 
  
 0.966
C357_15576
COG1605 Chorismate mutase.
 
 
 0.959
C357_04182
COG1605 Chorismate mutase.
   
 0.953
C357_13340
COG0021 Transketolase.
     
 0.914
C357_04437
COG0703 Shikimate kinase.
    
 0.585
C357_00589
COG0077 Prephenate dehydratase.
 
  
 0.534
C357_07646
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
       0.509
C357_11594
Helicase-like protein; COG0513 Superfamily II DNA and RNA helicases.
  
     0.483
C357_07636
Hypothetical protein.
       0.456
C357_10202
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
      
 0.408
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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