Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
flaFFlagellar biosynthesis regulatory protein FlaF; COG0292 Ribosomal protein L20. (120 aa)    
Predicted Functional Partners:
flbT
Flagellar biosynthesis repressor FlbT.
 
  
 0.999
C357_08076
Flagellin-like protein; COG1344 Flagellin and related hook-associated proteins.
 
  
 0.991
C357_05573
Hypothetical protein; COG1344 Flagellin and related hook-associated proteins.
 
  
 0.983
C357_08061
Hypothetical protein.
 
    0.976
flgK
COG1256 Flagellar hook-associated protein.
 
  
 0.929
flgB
COG1815 Flagellar basal body protein.
 
  
 0.915
C357_08086
Flagellar protein FlgJ, putative; COG3951 Rod binding protein.
 
    0.907
C357_21317
Hypothetical protein.
   
    0.903
C357_16631
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
    0.897
C357_02826
COG1344 Flagellin and related hook-associated proteins.
 
  
 0.894
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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