STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_12856TRAP dicarboxylate transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component. (438 aa)    
Predicted Functional Partners:
C357_12861
TRAP dicarboxylate family transporter DctQ subunit; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
  
  0.996
C357_12866
TRAP dicarboxylate family transporter DctP subunit; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
  
  0.989
C357_14651
Putative transporter DctQ-like transmembrane protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
    0.861
C357_12851
COG0129 Dihydroxyacid dehydratase/phosphogluconate dehydratase.
 
     0.789
C357_14656
Extracellular solute-binding protein; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
  
 0.771
C357_22310
Twin-arginine translocation pathway signal; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
  
 0.750
C357_04472
TRAP transporter - DctP subunit; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
  
 0.703
C357_08011
Trap transporter solute receptor; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.566
C357_11229
TRAP dicarboxylate transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.510
C357_17188
Putative extracellular solute-binding protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
     0.510
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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