infA protein (Citreicella sp. 357) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

infA

COG0361 Translation initiation factor 1 (IF-1). (72 aa)

Predicted Functional Partners:

rpsB

0.999

rpsJ

0.999

rplD

0.999

rpsS

0.999

rpsC

0.999

rpsE

0.999

rpsH

0.999

rpsN

0.999

rpsQ

0.999

rpsL

0.999

Your Current Organism:

Citreicella sp. 357

NCBI taxonomy Id: 766499
Other names: C. sp. 357

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
infA	rplD	C357_13168	C357_05099	COG0361 Translation initiation factor 1 (IF-1).	COG0088 Ribosomal protein L4.	0.999
infA	rpsB	C357_13168	C357_02991	COG0361 Translation initiation factor 1 (IF-1).	COG0052 Ribosomal protein S2.	0.999
infA	rpsC	C357_13168	C357_05129	COG0361 Translation initiation factor 1 (IF-1).	COG0092 Ribosomal protein S3.	0.999
infA	rpsE	C357_13168	C357_10272	COG0361 Translation initiation factor 1 (IF-1).	COG0098 Ribosomal protein S5.	0.999
infA	rpsH	C357_13168	C357_10287	COG0361 Translation initiation factor 1 (IF-1).	COG0096 Ribosomal protein S8.	0.999
infA	rpsJ	C357_13168	C357_05089	COG0361 Translation initiation factor 1 (IF-1).	COG0051 Ribosomal protein S10.	0.999
infA	rpsL	C357_13168	C357_12834	COG0361 Translation initiation factor 1 (IF-1).	COG0048 Ribosomal protein S12.	0.999
infA	rpsN	C357_13168	C357_10292	COG0361 Translation initiation factor 1 (IF-1).	COG0199 Ribosomal protein S14.	0.999
infA	rpsQ	C357_13168	C357_10312	COG0361 Translation initiation factor 1 (IF-1).	COG0186 Ribosomal protein S17.	0.999
infA	rpsS	C357_13168	C357_05119	COG0361 Translation initiation factor 1 (IF-1).	COG0185 Ribosomal protein S19.	0.999
rplD	infA	C357_05099	C357_13168	COG0088 Ribosomal protein L4.	COG0361 Translation initiation factor 1 (IF-1).	0.999
rplD	rpsB	C357_05099	C357_02991	COG0088 Ribosomal protein L4.	COG0052 Ribosomal protein S2.	0.999
rplD	rpsC	C357_05099	C357_05129	COG0088 Ribosomal protein L4.	COG0092 Ribosomal protein S3.	0.999
rplD	rpsE	C357_05099	C357_10272	COG0088 Ribosomal protein L4.	COG0098 Ribosomal protein S5.	0.999
rplD	rpsH	C357_05099	C357_10287	COG0088 Ribosomal protein L4.	COG0096 Ribosomal protein S8.	0.999
rplD	rpsJ	C357_05099	C357_05089	COG0088 Ribosomal protein L4.	COG0051 Ribosomal protein S10.	0.999
rplD	rpsL	C357_05099	C357_12834	COG0088 Ribosomal protein L4.	COG0048 Ribosomal protein S12.	0.999
rplD	rpsN	C357_05099	C357_10292	COG0088 Ribosomal protein L4.	COG0199 Ribosomal protein S14.	0.999
rplD	rpsQ	C357_05099	C357_10312	COG0088 Ribosomal protein L4.	COG0186 Ribosomal protein S17.	0.999
rplD	rpsS	C357_05099	C357_05119	COG0088 Ribosomal protein L4.	COG0185 Ribosomal protein S19.	0.999