Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
C357_16396COG4206 Outer membrane cobalamin receptor protein. (647 aa)    
Predicted Functional Partners:
C357_16401
Periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
   
 0.973
C357_16411
ABC transporter-like protein; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 
   
 0.955
C357_16406
COG0609 ABC-type Fe3+-siderophore transport system, permease component.
 
   
 0.954
C357_10042
Hypothetical protein.
    
 0.945
C357_09528
Hypothetical protein.
 
 
 
 0.857
C357_06032
COG3637 Opacity protein and related surface antigens.
     
 0.829
C357_16251
COG3047 Outer membrane protein W.
     
 0.829
C357_01164
COG1452 Organic solvent tolerance protein OstA.
  
  
 0.796
C357_13026
TolA protein.
   
 
 0.788
C357_20832
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
  0.760
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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