STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_16741Exonuclease, putative; COG0349 Ribonuclease D. (204 aa)    
Predicted Functional Partners:
C357_03290
COG0557 Exoribonuclease R.
   
 0.991
rph
COG0689 RNase PH.
   
 0.991
rpsD
COG0522 Ribosomal protein S4 and related proteins.
   
  0.979
C357_18881
COG0100 Ribosomal protein S11.
    
  0.978
rpsA
COG0539 Ribosomal protein S1.
   
 0.977
C357_22720
ATP-dependent helicase HrpB; COG1643 HrpA-like helicases.
   
 0.968
rplD
COG0088 Ribosomal protein L4.
    
  0.935
rplW
COG0089 Ribosomal protein L23.
  
 
  0.922
rpsM
COG0099 Ribosomal protein S13.
    
   0.916
rpsQ
COG0186 Ribosomal protein S17.
    
   0.914
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.