STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_19461Peptide deformylase; COG0242 N-formylmethionyl-tRNA deformylase; overlaps another CDS with the same product name. (173 aa)    
Predicted Functional Partners:
C357_08541
COG0223 Methionyl-tRNA formyltransferase.
 0.961
rplT
COG0292 Ribosomal protein L20.
  
   0.961
C357_13410
50S ribosomal protein L21/unknown domain fusion protein; COG0261 Ribosomal protein L21.
 
   0.949
rplS
COG0335 Ribosomal protein L19.
 
 
   0.947
rpsP
COG0228 Ribosomal protein S16.
 
   0.939
rplI
COG0359 Ribosomal protein L9.
 
   0.937
rpsJ
COG0051 Ribosomal protein S10.
  
   0.935
tig
Trigger factor; COG0544 FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor).
  
 
 0.930
C357_12824
COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit.
  
   0.930
rplV
COG0091 Ribosomal protein L22.
  
 
   0.928
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.