Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
rnhACOG0328 Ribonuclease HI. (153 aa)    
Predicted Functional Partners:
C357_09154
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
   
 0.946
C357_15001
COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
 
 
 0.935
rnhB
COG0164 Ribonuclease HII.
   
 0.883
C357_03176
COG0629 Single-stranded DNA-binding protein.
 
 
 0.871
C357_19471
COG2860 Predicted membrane protein.
       0.832
C357_19011
COG2812 DNA polymerase III, gamma/tau subunits.
  
 0.764
C357_09134
N-acetyltransferase; GCN5-related; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
 
      0.697
C357_16386
Signal transduction histidine kinase with CheB and CheR activity; COG2201 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
 
 
 0.678
C357_19481
Hypothetical protein.
       0.657
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; COG0761 Penicillin tolerance protein.
       0.640
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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