Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C357_19728Hypothetical protein. (83 aa)    
Predicted Functional Partners:
C357_09503
COG2104 Sulfur transfer protein involved in thiamine biosynthesis.
  
 0.934
C357_19723
Hypothetical protein; COG0351 Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
  
  
 0.905
C357_15946
COG1977 Molybdopterin converting factor, small subunit.
   
 0.887
C357_15951
COG0314 Molybdopterin converting factor, large subunit.
  
 0.858
C357_08860
Aminotransferase, class V; COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
   
 0.740
C357_09488
COG0422 Thiamine biosynthesis protein ThiC.
  
  
 0.693
mnmA
tRNA-specific 2-thiouridylase MnmA; COG0482 Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the ATPase domain.
    
 0.607
C357_14324
Hypothetical protein.
    
 0.593
C357_05528
Thiamine-phosphate pyrophosphorylase, putative; COG0352 Thiamine monophosphate synthase.
  
 
 0.570
thiE
Thiamine-phosphate pyrophosphorylase; COG0352 Thiamine monophosphate synthase.
  
 
 0.570
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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