STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C357_21307COG0272 NAD-dependent DNA ligase (contains BRCT domain type II). (751 aa)    
Predicted Functional Partners:
C357_09573
COG0210 Superfamily I DNA and RNA helicases.
 
  
 0.953
leuS
COG0495 Leucyl-tRNA synthetase.
  
 
 
 0.939
C357_21302
COG1200 RecG-like helicase.
 
  
 0.934
C357_11619
COG1793 ATP-dependent DNA ligase.
    
 0.929
C357_09154
DNA polymerase I; COG0258 5'-3' exonuclease (including N-terminal domain of PolI).
 
   
 0.793
C357_19011
COG2812 DNA polymerase III, gamma/tau subunits.
 
  
 0.770
uvrC
COG0322 Nuclease subunit of the excinuclease complex.
 
  
 0.759
C357_10547
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
   
 
 0.729
C357_08136
COG0592 DNA polymerase sliding clamp subunit (PCNA homolog).
  
  
 0.726
C357_13507
DNA polymerase III subunit delta; COG0470 ATPase involved in DNA replication.
 
  
 0.691
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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