Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
C357_22155DNA-binding protein, putative; COG1396 Predicted transcriptional regulators. (124 aa)    
Predicted Functional Partners:
C357_13727
Putative cytoplasmic protein; COG3820 Uncharacterized protein conserved in bacteria.
  
     0.718
C357_13657
HAD family hydrolase; COG0647 Predicted sugar phosphatases of the HAD superfamily.
  
  
  0.717
recO
COG1381 Recombinational DNA repair protein (RecF pathway).
  
     0.709
C357_22150
Histidinol-phosphate phosphatase, putative, inositol monophosphatase; COG0483 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family.
       0.677
C357_06729
Hypothetical protein.
  
     0.661
C357_06734
Hypothetical protein.
  
     0.602
C357_09089
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
  
     0.590
C357_12244
Hypothetical protein; COG2740 Predicted nucleic-acid-binding protein implicated in transcription termination.
 
     0.573
C357_15306
Metal dependent phosphohydrolase; COG1896 Predicted hydrolases of HD superfamily.
  
     0.567
C357_19496
Hypothetical protein.
  
     0.560
Your Current Organism:
Citreicella sp. 357
NCBI taxonomy Id: 766499
Other names: C. sp. 357
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