C357_22650 protein (Citreicella sp. 357) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

C357_22650

COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit. (666 aa)

Predicted Functional Partners:

C357_22685

0.983

C357_03905

0.950

C357_03885

0.946

C357_06814

0.944

C357_09882

0.941

C357_06539

0.935

C357_21635

0.924

C357_19226

0.910

C357_08241

0.894

C357_01919

0.872

Your Current Organism:

Citreicella sp. 357

NCBI taxonomy Id: 766499
Other names: C. sp. 357

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
C357_01919	C357_22650	Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.872
C357_03885	C357_06814	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0777 Acetyl-CoA carboxylase beta subunit.	0.843
C357_03885	C357_08241	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.	0.934
C357_03885	C357_19226	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0511 Biotin carboxyl carrier protein.	0.837
C357_03885	C357_21635	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0825 Acetyl-CoA carboxylase alpha subunit.	0.838
C357_03885	C357_22650	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.946
C357_03905	C357_06814	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0777 Acetyl-CoA carboxylase beta subunit.	0.843
C357_03905	C357_08241	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.	0.934
C357_03905	C357_19226	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0511 Biotin carboxyl carrier protein.	0.837
C357_03905	C357_21635	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0825 Acetyl-CoA carboxylase alpha subunit.	0.838
C357_03905	C357_22650	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.950
C357_06539	C357_06814	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0777 Acetyl-CoA carboxylase beta subunit.	0.843
C357_06539	C357_08241	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.	0.934
C357_06539	C357_19226	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0511 Biotin carboxyl carrier protein.	0.837
C357_06539	C357_21635	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG0825 Acetyl-CoA carboxylase alpha subunit.	0.838
C357_06539	C357_22650	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.	0.935
C357_06814	C357_03885	COG0777 Acetyl-CoA carboxylase beta subunit.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.843
C357_06814	C357_03905	COG0777 Acetyl-CoA carboxylase beta subunit.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.843
C357_06814	C357_06539	COG0777 Acetyl-CoA carboxylase beta subunit.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.843
C357_06814	C357_08241	COG0777 Acetyl-CoA carboxylase beta subunit.	Non-ribosomal peptide synthase; COG3321 Polyketide synthase modules and related proteins.	0.598