W4XLF7_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4XLF7_STRPU

Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (279 aa)

Predicted Functional Partners:

W4Y5E3_STRPU

0.559

W4XBX8_STRPU

0.551

W4YS12_STRPU

0.547

W4Y4J6_STRPU

0.546

W4ZDR6_STRPU

0.542

W4Y2D9_STRPU

0.408

W4YS29_STRPU

0.408

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4XBX8_STRPU	W4XLF7_STRPU	W4XBX8	W4XLF7	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.551
W4XBX8_STRPU	W4YS12_STRPU	W4XBX8	W4YS12	Uncharacterized protein.	PCI domain-containing protein.	0.687
W4XLF7_STRPU	W4XBX8_STRPU	W4XLF7	W4XBX8	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.551
W4XLF7_STRPU	W4Y2D9_STRPU	W4XLF7	W4Y2D9	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.408
W4XLF7_STRPU	W4Y4J6_STRPU	W4XLF7	W4Y4J6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.546
W4XLF7_STRPU	W4Y5E3_STRPU	W4XLF7	W4Y5E3	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix; Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily.	0.559
W4XLF7_STRPU	W4YS12_STRPU	W4XLF7	W4YS12	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	PCI domain-containing protein.	0.547
W4XLF7_STRPU	W4YS29_STRPU	W4XLF7	W4YS29	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.408
W4XLF7_STRPU	W4ZDR6_STRPU	W4XLF7	W4ZDR6	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein.	0.542
W4Y2D9_STRPU	W4XLF7_STRPU	W4Y2D9	W4XLF7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.408
W4Y4J6_STRPU	W4XLF7_STRPU	W4Y4J6	W4XLF7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.546
W4Y5E3_STRPU	W4XLF7_STRPU	W4Y5E3	W4XLF7	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix; Belongs to the mitochondrial carrier (TC 2.A.29) family. SLC25A38 subfamily.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.559
W4YS12_STRPU	W4XBX8_STRPU	W4YS12	W4XBX8	PCI domain-containing protein.	Uncharacterized protein.	0.687
W4YS12_STRPU	W4XLF7_STRPU	W4YS12	W4XLF7	PCI domain-containing protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.547
W4YS29_STRPU	W4XLF7_STRPU	W4YS29	W4XLF7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.408
W4ZDR6_STRPU	W4XLF7_STRPU	W4ZDR6	W4XLF7	Uncharacterized protein.	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.542