STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4XMC1_STRPURNA_pol_Rpb1_5 domain-containing protein. (145 aa)    
Predicted Functional Partners:
W4XGX0_STRPU
Uncharacterized protein.
  
 0.956
W4ZE09_STRPU
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
     0.941
W4XVC0_STRPU
Uncharacterized protein.
   
 0.937
W4XWN3_STRPU
RPOLA_N domain-containing protein.
 
     0.937
W4ZE10_STRPU
Uncharacterized protein.
 
     0.936
W4XN01_STRPU
Uncharacterized protein.
   
 0.935
W4YUG6_STRPU
DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.
   
 0.934
W4ZK05_STRPU
Uncharacterized protein.
  
 0.931
W4Z1L9_STRPU
Uncharacterized protein.
   
 0.929
W4XXE9_STRPU
RNA_pol_L_2 domain-containing protein.
   
 0.927
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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