W4XXD5_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4XXD5_STRPU

Uncharacterized protein. (128 aa)

Predicted Functional Partners:

W4XD53_STRPU

0.917

W4XKE1_STRPU

0.917

W4XS74_STRPU

0.916

W4XZ00_STRPU

0.916

W4YG47_STRPU

0.916

W4Z1D6_STRPU

0.916

W4Z6C3_STRPU

0.916

W4YRI1_STRPU

0.914

W4YPJ6_STRPU

0.913

W4Y5U3_STRPU

0.911

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4XD53_STRPU	W4XKE1_STRPU	W4XD53	W4XKE1	TFIID_20kDa domain-containing protein.	TAFH domain-containing protein.	0.999
W4XD53_STRPU	W4XS74_STRPU	W4XD53	W4XS74	TFIID_20kDa domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
W4XD53_STRPU	W4XXD5_STRPU	W4XD53	W4XXD5	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.917
W4XD53_STRPU	W4XZ00_STRPU	W4XD53	W4XZ00	TFIID_20kDa domain-containing protein.	TAFII28 domain-containing protein.	0.999
W4XD53_STRPU	W4Y5U3_STRPU	W4XD53	W4Y5U3	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.978
W4XD53_STRPU	W4YG47_STRPU	W4XD53	W4YG47	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.999
W4XD53_STRPU	W4YPJ6_STRPU	W4XD53	W4YPJ6	TFIID_20kDa domain-containing protein.	TFIIA_gamma_C domain-containing protein.	0.978
W4XD53_STRPU	W4YRI1_STRPU	W4XD53	W4YRI1	TFIID_20kDa domain-containing protein.	SANT domain-containing protein.	0.408
W4XD53_STRPU	W4Z1D6_STRPU	W4XD53	W4Z1D6	TFIID_20kDa domain-containing protein.	Uncharacterized protein.	0.999
W4XD53_STRPU	W4Z6C3_STRPU	W4XD53	W4Z6C3	TFIID_20kDa domain-containing protein.	TAFII55_N domain-containing protein.	0.999
W4XKE1_STRPU	W4XD53_STRPU	W4XKE1	W4XD53	TAFH domain-containing protein.	TFIID_20kDa domain-containing protein.	0.999
W4XKE1_STRPU	W4XS74_STRPU	W4XKE1	W4XS74	TAFH domain-containing protein.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.999
W4XKE1_STRPU	W4XXD5_STRPU	W4XKE1	W4XXD5	TAFH domain-containing protein.	Uncharacterized protein.	0.917
W4XKE1_STRPU	W4XZ00_STRPU	W4XKE1	W4XZ00	TAFH domain-containing protein.	TAFII28 domain-containing protein.	0.999
W4XKE1_STRPU	W4Y5U3_STRPU	W4XKE1	W4Y5U3	TAFH domain-containing protein.	Uncharacterized protein.	0.962
W4XKE1_STRPU	W4YG47_STRPU	W4XKE1	W4YG47	TAFH domain-containing protein.	Uncharacterized protein.	0.999
W4XKE1_STRPU	W4YPJ6_STRPU	W4XKE1	W4YPJ6	TAFH domain-containing protein.	TFIIA_gamma_C domain-containing protein.	0.990
W4XKE1_STRPU	W4Z1D6_STRPU	W4XKE1	W4Z1D6	TAFH domain-containing protein.	Uncharacterized protein.	0.999
W4XKE1_STRPU	W4Z6C3_STRPU	W4XKE1	W4Z6C3	TAFH domain-containing protein.	TAFII55_N domain-containing protein.	0.999
W4XS74_STRPU	W4XD53_STRPU	W4XS74	W4XD53	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TFIID_20kDa domain-containing protein.	0.999