STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4Y5P7_STRPUUncharacterized protein. (200 aa)    
Predicted Functional Partners:
W4Z472_STRPU
Uncharacterized protein.
   
 0.720
W4Z7E1_STRPU
RRM domain-containing protein.
   
 0.713
W4XH14_STRPU
Uncharacterized protein.
   
 0.692
W4Y2A5_STRPU
Nuclear cap-binding protein subunit 2.
   
 0.691
W4YJH2_STRPU
RRM domain-containing protein.
   
 0.659
W4XC58_STRPU
Uncharacterized protein.
   
 0.649
W4Y9J6_STRPU
RRM domain-containing protein.
   
 0.649
W4YY44_STRPU
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 0.637
W4Y4I3_STRPU
RRM domain-containing protein.
   
 0.636
W4ZFQ5_STRPU
RRM domain-containing protein.
   
 0.636
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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