W4Y5U3_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4Y5U3_STRPU

Uncharacterized protein. (199 aa)

Predicted Functional Partners:

W4XGX0_STRPU

0.999

W4YK26_STRPU

0.998

W4YQK1_STRPU

0.998

W4Z4F9_STRPU

0.998

W4XKS3_STRPU

0.997

W4ZCA0_STRPU

0.997

W4YER9_STRPU

0.996

W4YUG6_STRPU

0.995

W4Z6D7_STRPU

0.994

W4YPJ6_STRPU

0.993

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4XGX0_STRPU	W4XKS3_STRPU	W4XGX0	W4XKS3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.999
W4XGX0_STRPU	W4Y5U3_STRPU	W4XGX0	W4Y5U3	Uncharacterized protein.	Uncharacterized protein.	0.999
W4XGX0_STRPU	W4YER9_STRPU	W4XGX0	W4YER9	Uncharacterized protein.	MAT1 domain-containing protein.	0.992
W4XGX0_STRPU	W4YK26_STRPU	W4XGX0	W4YK26	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.981
W4XGX0_STRPU	W4YPJ6_STRPU	W4XGX0	W4YPJ6	Uncharacterized protein.	TFIIA_gamma_C domain-containing protein.	0.992
W4XGX0_STRPU	W4YQK1_STRPU	W4XGX0	W4YQK1	Uncharacterized protein.	S1 domain-containing protein.	0.999
W4XGX0_STRPU	W4YUG6_STRPU	W4XGX0	W4YUG6	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
W4XGX0_STRPU	W4Z4F9_STRPU	W4XGX0	W4Z4F9	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.997
W4XGX0_STRPU	W4Z6D7_STRPU	W4XGX0	W4Z6D7	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.999
W4XGX0_STRPU	W4ZCA0_STRPU	W4XGX0	W4ZCA0	Uncharacterized protein.	Uncharacterized protein.	0.994
W4XKS3_STRPU	W4XGX0_STRPU	W4XKS3	W4XGX0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.999
W4XKS3_STRPU	W4Y5U3_STRPU	W4XKS3	W4Y5U3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.997
W4XKS3_STRPU	W4YER9_STRPU	W4XKS3	W4YER9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	MAT1 domain-containing protein.	0.992
W4XKS3_STRPU	W4YK26_STRPU	W4XKS3	W4YK26	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.990
W4XKS3_STRPU	W4YPJ6_STRPU	W4XKS3	W4YPJ6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	TFIIA_gamma_C domain-containing protein.	0.992
W4XKS3_STRPU	W4YQK1_STRPU	W4XKS3	W4YQK1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	S1 domain-containing protein.	0.999
W4XKS3_STRPU	W4YUG6_STRPU	W4XKS3	W4YUG6	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
W4XKS3_STRPU	W4Z4F9_STRPU	W4XKS3	W4Z4F9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	HTH TFE/IIEalpha-type domain-containing protein.	0.997
W4XKS3_STRPU	W4Z6D7_STRPU	W4XKS3	W4Z6D7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	RNA_pol_L_2 domain-containing protein.	0.999
W4XKS3_STRPU	W4ZCA0_STRPU	W4XKS3	W4ZCA0	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.993