STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4YCV3_STRPUUncharacterized protein. (557 aa)    
Predicted Functional Partners:
W4Z5B3_STRPU
Brix domain-containing protein.
   
  
 0.877
W4Y3M6_STRPU
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
   0.705
W4ZFB7_STRPU
Uncharacterized protein.
   
    0.679
W4YTL8_STRPU
Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family.
   
  
 0.646
W4Z116_STRPU
Uncharacterized protein.
   
  
 0.644
W4XRA1_STRPU
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
   0.637
W4XV11_STRPU
WD_REPEATS_REGION domain-containing protein.
   
    0.631
W4YRD4_STRPU
Brix domain-containing protein.
   
    0.623
W4Z7Z0_STRPU
Uncharacterized protein.
   
    0.623
W4ZA51_STRPU
Uncharacterized protein.
   
    0.606
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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