W4YI17_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4YI17_STRPU

Adaptin_N domain-containing protein. (368 aa)

Predicted Functional Partners:

W4ZA39_STRPU

0.987

W4XSN7_STRPU

0.930

W4XYD3_STRPU

0.930

W4YL58_STRPU

0.902

W4YZ25_STRPU

0.902

W4YZN1_STRPU

0.902

W4YGC6_STRPU

0.889

W4XSU8_STRPU

0.888

W4YT72_STRPU

0.888

W4Y1P3_STRPU

0.878

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4XSN7_STRPU	W4XSU8_STRPU	W4XSN7	W4XSU8	Coatomer_b_Cpla domain-containing protein.	Uncharacterized protein.	0.888
W4XSN7_STRPU	W4Y1P3_STRPU	W4XSN7	W4Y1P3	Coatomer_b_Cpla domain-containing protein.	COPI_C domain-containing protein.	0.878
W4XSN7_STRPU	W4YGC6_STRPU	W4XSN7	W4YGC6	Coatomer_b_Cpla domain-containing protein.	Coatomer_WDAD domain-containing protein.	0.889
W4XSN7_STRPU	W4YI17_STRPU	W4XSN7	W4YI17	Coatomer_b_Cpla domain-containing protein.	Adaptin_N domain-containing protein.	0.930
W4XSN7_STRPU	W4YL58_STRPU	W4XSN7	W4YL58	Coatomer_b_Cpla domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.902
W4XSN7_STRPU	W4YT72_STRPU	W4XSN7	W4YT72	Coatomer_b_Cpla domain-containing protein.	Uncharacterized protein.	0.888
W4XSN7_STRPU	W4YZ25_STRPU	W4XSN7	W4YZ25	Coatomer_b_Cpla domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.902
W4XSN7_STRPU	W4YZN1_STRPU	W4XSN7	W4YZN1	Coatomer_b_Cpla domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.902
W4XSN7_STRPU	W4ZA39_STRPU	W4XSN7	W4ZA39	Coatomer_b_Cpla domain-containing protein.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.987
W4XSU8_STRPU	W4XSN7_STRPU	W4XSU8	W4XSN7	Uncharacterized protein.	Coatomer_b_Cpla domain-containing protein.	0.888
W4XSU8_STRPU	W4XYD3_STRPU	W4XSU8	W4XYD3	Uncharacterized protein.	Uncharacterized protein.	0.888
W4XSU8_STRPU	W4Y1P3_STRPU	W4XSU8	W4Y1P3	Uncharacterized protein.	COPI_C domain-containing protein.	0.923
W4XSU8_STRPU	W4YGC6_STRPU	W4XSU8	W4YGC6	Uncharacterized protein.	Coatomer_WDAD domain-containing protein.	0.894
W4XSU8_STRPU	W4YI17_STRPU	W4XSU8	W4YI17	Uncharacterized protein.	Adaptin_N domain-containing protein.	0.888
W4XSU8_STRPU	W4YL58_STRPU	W4XSU8	W4YL58	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.894
W4XSU8_STRPU	W4YZ25_STRPU	W4XSU8	W4YZ25	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.894
W4XSU8_STRPU	W4YZN1_STRPU	W4XSU8	W4YZN1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.894
W4XSU8_STRPU	W4ZA39_STRPU	W4XSU8	W4ZA39	Uncharacterized protein.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.989
W4XYD3_STRPU	W4XSU8_STRPU	W4XYD3	W4XSU8	Uncharacterized protein.	Uncharacterized protein.	0.888
W4XYD3_STRPU	W4Y1P3_STRPU	W4XYD3	W4Y1P3	Uncharacterized protein.	COPI_C domain-containing protein.	0.878