W4Z3I1_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4Z3I1_STRPU

Protein kinase domain-containing protein. (3060 aa)

Predicted Functional Partners:

W4YQE2_STRPU

0.612

W4Z731_STRPU

0.606

W4YCY0_STRPU

0.545

W4YU92_STRPU

0.542

4e-bp

0.465

W4YFH8_STRPU

0.447

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
4e-bp	W4Z3I1_STRPU	A3KLJ6	W4Z3I1	4E-BP protein.	Protein kinase domain-containing protein.	0.465
W4YCY0_STRPU	W4YQE2_STRPU	W4YCY0	W4YQE2	DJ-1_PfpI domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.957
W4YCY0_STRPU	W4Z3I1_STRPU	W4YCY0	W4Z3I1	DJ-1_PfpI domain-containing protein.	Protein kinase domain-containing protein.	0.545
W4YFH8_STRPU	W4YQE2_STRPU	W4YFH8	W4YQE2	SH3 domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.745
W4YFH8_STRPU	W4Z3I1_STRPU	W4YFH8	W4Z3I1	SH3 domain-containing protein.	Protein kinase domain-containing protein.	0.447
W4YQE2_STRPU	W4YCY0_STRPU	W4YQE2	W4YCY0	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	DJ-1_PfpI domain-containing protein.	0.957
W4YQE2_STRPU	W4YFH8_STRPU	W4YQE2	W4YFH8	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	SH3 domain-containing protein.	0.745
W4YQE2_STRPU	W4Z3I1_STRPU	W4YQE2	W4Z3I1	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	Protein kinase domain-containing protein.	0.612
W4YQE2_STRPU	W4Z731_STRPU	W4YQE2	W4Z731	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	BAR domain-containing protein.	0.876
W4YU92_STRPU	W4Z3I1_STRPU	W4YU92	W4Z3I1	Uncharacterized protein.	Protein kinase domain-containing protein.	0.542
W4YU92_STRPU	W4Z731_STRPU	W4YU92	W4Z731	Uncharacterized protein.	BAR domain-containing protein.	0.410
W4Z3I1_STRPU	4e-bp	W4Z3I1	A3KLJ6	Protein kinase domain-containing protein.	4E-BP protein.	0.465
W4Z3I1_STRPU	W4YCY0_STRPU	W4Z3I1	W4YCY0	Protein kinase domain-containing protein.	DJ-1_PfpI domain-containing protein.	0.545
W4Z3I1_STRPU	W4YFH8_STRPU	W4Z3I1	W4YFH8	Protein kinase domain-containing protein.	SH3 domain-containing protein.	0.447
W4Z3I1_STRPU	W4YQE2_STRPU	W4Z3I1	W4YQE2	Protein kinase domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.612
W4Z3I1_STRPU	W4YU92_STRPU	W4Z3I1	W4YU92	Protein kinase domain-containing protein.	Uncharacterized protein.	0.542
W4Z3I1_STRPU	W4Z731_STRPU	W4Z3I1	W4Z731	Protein kinase domain-containing protein.	BAR domain-containing protein.	0.606
W4Z731_STRPU	W4YQE2_STRPU	W4Z731	W4YQE2	BAR domain-containing protein.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.876
W4Z731_STRPU	W4YU92_STRPU	W4Z731	W4YU92	BAR domain-containing protein.	Uncharacterized protein.	0.410
W4Z731_STRPU	W4Z3I1_STRPU	W4Z731	W4Z3I1	BAR domain-containing protein.	Protein kinase domain-containing protein.	0.606