W4Z772_STRPU protein (Strongylocentrotus purpuratus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W4Z772_STRPU

Uncharacterized protein. (577 aa)

Predicted Functional Partners:

W4YCM0_STRPU

0.927

W4Z513_STRPU

0.927

W4YI40_STRPU

0.822

W4YP85_STRPU

0.769

W4X9V2_STRPU

0.729

W4XLJ7_STRPU

0.696

W4YUW8_STRPU

0.696

W4ZG75_STRPU

0.696

W4XI51_STRPU

0.672

W4Y0P9_STRPU

0.672

Your Current Organism:

Strongylocentrotus purpuratus

NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W4X9V2_STRPU	W4XI51_STRPU	W4X9V2	W4XI51	Importin N-terminal domain-containing protein.	Nuclear pore protein.	0.907
W4X9V2_STRPU	W4XLJ7_STRPU	W4X9V2	W4XLJ7	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.598
W4X9V2_STRPU	W4YCM0_STRPU	W4X9V2	W4YCM0	Importin N-terminal domain-containing protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.988
W4X9V2_STRPU	W4YUW8_STRPU	W4X9V2	W4YUW8	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.598
W4X9V2_STRPU	W4Z513_STRPU	W4X9V2	W4Z513	Importin N-terminal domain-containing protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.988
W4X9V2_STRPU	W4Z772_STRPU	W4X9V2	W4Z772	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.729
W4X9V2_STRPU	W4ZG75_STRPU	W4X9V2	W4ZG75	Importin N-terminal domain-containing protein.	Uncharacterized protein.	0.598
W4XI51_STRPU	W4X9V2_STRPU	W4XI51	W4X9V2	Nuclear pore protein.	Importin N-terminal domain-containing protein.	0.907
W4XI51_STRPU	W4XLJ7_STRPU	W4XI51	W4XLJ7	Nuclear pore protein.	Uncharacterized protein.	0.689
W4XI51_STRPU	W4YCM0_STRPU	W4XI51	W4YCM0	Nuclear pore protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.689
W4XI51_STRPU	W4YI40_STRPU	W4XI51	W4YI40	Nuclear pore protein.	RanBD1 domain-containing protein.	0.504
W4XI51_STRPU	W4YUW8_STRPU	W4XI51	W4YUW8	Nuclear pore protein.	Uncharacterized protein.	0.689
W4XI51_STRPU	W4Z513_STRPU	W4XI51	W4Z513	Nuclear pore protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.689
W4XI51_STRPU	W4Z772_STRPU	W4XI51	W4Z772	Nuclear pore protein.	Uncharacterized protein.	0.672
W4XI51_STRPU	W4ZG75_STRPU	W4XI51	W4ZG75	Nuclear pore protein.	Uncharacterized protein.	0.689
W4XLJ7_STRPU	W4X9V2_STRPU	W4XLJ7	W4X9V2	Uncharacterized protein.	Importin N-terminal domain-containing protein.	0.598
W4XLJ7_STRPU	W4XI51_STRPU	W4XLJ7	W4XI51	Uncharacterized protein.	Nuclear pore protein.	0.689
W4XLJ7_STRPU	W4YCM0_STRPU	W4XLJ7	W4YCM0	Uncharacterized protein.	G_PROTEIN_RECEP_F2_4 domain-containing protein.	0.903
W4XLJ7_STRPU	W4YI40_STRPU	W4XLJ7	W4YI40	Uncharacterized protein.	RanBD1 domain-containing protein.	0.505
W4XLJ7_STRPU	W4Z513_STRPU	W4XLJ7	W4Z513	Uncharacterized protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.903