STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W4Z7Z0_STRPUUncharacterized protein. (416 aa)    
Predicted Functional Partners:
W4XTB8_STRPU
WD_REPEATS_REGION domain-containing protein.
   
 
 0.999
W4XV11_STRPU
WD_REPEATS_REGION domain-containing protein.
   
 
 0.999
W4Y0P9_STRPU
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.999
W4Y4E6_STRPU
WD_REPEATS_REGION domain-containing protein.
   
 
 0.999
W4Y7N7_STRPU
Uncharacterized protein.
   
 0.999
W4Y978_STRPU
WD_REPEATS_REGION domain-containing protein.
   
 
 0.999
W4YD34_STRPU
KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.
   
 0.999
W4YG90_STRPU
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
 
 0.999
W4YGA9_STRPU
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.999
W4YH46_STRPU
DUF663 domain-containing protein.
   
 0.999
Your Current Organism:
Strongylocentrotus purpuratus
NCBI taxonomy Id: 7668
Other names: S. purpuratus, purple sea urchin, purple urchin
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