AFN46104.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AFN46104.1

Heavy metal-associated domain protein. (69 aa)

Predicted Functional Partners:

AFN46145.1

0.972

AFN47221.1

0.917

csoR

0.851

AFN47382.1

0.767

AFN46183.1

0.666

nifJ

0.525

guaA

0.454

ppa

0.443

AFN47603.1

0.433

polA

0.429

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN46104.1	AFN46145.1	HMPREF9154_0264	HMPREF9154_0265	Heavy metal-associated domain protein.	Copper-exporting ATPase.	0.972
AFN46104.1	AFN46183.1	HMPREF9154_0264	HMPREF9154_0546	Heavy metal-associated domain protein.	Cytochrome C biogenesis protein transmembrane region.	0.666
AFN46104.1	AFN47221.1	HMPREF9154_0264	HMPREF9154_0708	Heavy metal-associated domain protein.	Copper-exporting ATPase.	0.917
AFN46104.1	AFN47382.1	HMPREF9154_0264	HMPREF9154_0285	Heavy metal-associated domain protein.	Transcriptional regulator, BlaI/MecI/CopY family.	0.767
AFN46104.1	AFN47603.1	HMPREF9154_0264	HMPREF9154_0706	Heavy metal-associated domain protein.	Putative copper resistance protein A.	0.433
AFN46104.1	csoR	HMPREF9154_0264	HMPREF9154_0263	Heavy metal-associated domain protein.	Copper-sensing transcriptional repressor CsoR.	0.851
AFN46104.1	guaA	HMPREF9154_0264	HMPREF9154_2130	Heavy metal-associated domain protein.	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.	0.454
AFN46104.1	nifJ	HMPREF9154_0264	HMPREF9154_0751	Heavy metal-associated domain protein.	Pyruvate synthase.	0.525
AFN46104.1	polA	HMPREF9154_0264	HMPREF9154_1906	Heavy metal-associated domain protein.	DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.	0.429
AFN46104.1	ppa	HMPREF9154_0264	HMPREF9154_2782	Heavy metal-associated domain protein.	Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.	0.443
AFN46145.1	AFN46104.1	HMPREF9154_0265	HMPREF9154_0264	Copper-exporting ATPase.	Heavy metal-associated domain protein.	0.972
AFN46145.1	AFN46183.1	HMPREF9154_0265	HMPREF9154_0546	Copper-exporting ATPase.	Cytochrome C biogenesis protein transmembrane region.	0.509
AFN46145.1	AFN47603.1	HMPREF9154_0265	HMPREF9154_0706	Copper-exporting ATPase.	Putative copper resistance protein A.	0.504
AFN46145.1	csoR	HMPREF9154_0265	HMPREF9154_0263	Copper-exporting ATPase.	Copper-sensing transcriptional repressor CsoR.	0.754
AFN46145.1	nifJ	HMPREF9154_0265	HMPREF9154_0751	Copper-exporting ATPase.	Pyruvate synthase.	0.647
AFN46183.1	AFN46104.1	HMPREF9154_0546	HMPREF9154_0264	Cytochrome C biogenesis protein transmembrane region.	Heavy metal-associated domain protein.	0.666
AFN46183.1	AFN46145.1	HMPREF9154_0546	HMPREF9154_0265	Cytochrome C biogenesis protein transmembrane region.	Copper-exporting ATPase.	0.509
AFN46183.1	AFN47221.1	HMPREF9154_0546	HMPREF9154_0708	Cytochrome C biogenesis protein transmembrane region.	Copper-exporting ATPase.	0.509
AFN46183.1	guaA	HMPREF9154_0546	HMPREF9154_2130	Cytochrome C biogenesis protein transmembrane region.	GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP.	0.547
AFN46183.1	nifJ	HMPREF9154_0546	HMPREF9154_0751	Cytochrome C biogenesis protein transmembrane region.	Pyruvate synthase.	0.688