Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFN45490.1Hypothetical protein. (78 aa)    
Predicted Functional Partners:
cbiX_1
Sirohydrochlorin cobaltochelatase.
       0.732
cobJ
precorrin-3B C(17)-methyltransferase.
       0.732
cobM
Precorrin-4 C(11)-methyltransferase.
       0.732
cobI
Precorrin-2 C(20)-methyltransferase; Belongs to the precorrin methyltransferase family.
       0.732
AFN47244.1
Hypothetical protein.
       0.624
cobH_1
precorrin-8X methylmutase.
       0.569
cbiD
Putative cobalamin biosynthesis protein CbiD; Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A.
       0.569
AFN45145.1
Hypothetical protein.
       0.543
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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