Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFN47207.1Transcriptional regulator, TetR family. (195 aa)    
Predicted Functional Partners:
AFN45784.1
Transcriptional regulator, TetR family.
  
     0.760
AFN47576.1
Transporter, major facilitator family protein.
 
     0.667
AFN45261.1
Efflux ABC transporter, permease protein.
  
    0.628
AFN46535.1
Hypothetical protein.
       0.544
AFN45949.1
Transcriptional regulator, MerR family.
  
     0.526
AFN45153.1
Hypothetical protein.
  
     0.525
AFN46004.1
Sugar-specific transcriptional regulator, TrmB family.
  
   
 0.521
AFN47235.1
CRISPR-associated RAMP protein.
  
     0.517
AFN46935.1
Transcriptional regulator, TetR family.
  
     0.516
AFN46496.1
Hypothetical protein.
  
     0.457
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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