Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFN45361.1 | tag | HMPREF9154_1177 | HMPREF9154_0564 | Hypothetical protein. | DNA-3-methyladenine glycosylase 1. | 0.545 |
| AFN47098.1 | AFN47719.1 | HMPREF9154_0563 | HMPREF9154_0562 | Transcriptional regulator, TetR family. | Neutral zinc metallopeptidase domain protein. | 0.601 |
| AFN47098.1 | tag | HMPREF9154_0563 | HMPREF9154_0564 | Transcriptional regulator, TetR family. | DNA-3-methyladenine glycosylase 1. | 0.773 |
| AFN47679.1 | mutM | HMPREF9154_2182 | HMPREF9154_1303 | Metal-binding domain of Ada. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.452 |
| AFN47679.1 | polA | HMPREF9154_2182 | HMPREF9154_1906 | Metal-binding domain of Ada. | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.927 |
| AFN47679.1 | tag | HMPREF9154_2182 | HMPREF9154_0564 | Metal-binding domain of Ada. | DNA-3-methyladenine glycosylase 1. | 0.717 |
| AFN47719.1 | AFN47098.1 | HMPREF9154_0562 | HMPREF9154_0563 | Neutral zinc metallopeptidase domain protein. | Transcriptional regulator, TetR family. | 0.601 |
| AFN47719.1 | tag | HMPREF9154_0562 | HMPREF9154_0564 | Neutral zinc metallopeptidase domain protein. | DNA-3-methyladenine glycosylase 1. | 0.545 |
| glyS | guaA | HMPREF9154_1474 | HMPREF9154_2130 | glycine--tRNA ligase, beta subunit. | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | 0.968 |
| glyS | tag | HMPREF9154_1474 | HMPREF9154_0564 | glycine--tRNA ligase, beta subunit. | DNA-3-methyladenine glycosylase 1. | 0.519 |
| guaA | glyS | HMPREF9154_2130 | HMPREF9154_1474 | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | glycine--tRNA ligase, beta subunit. | 0.968 |
| guaA | mutM | HMPREF9154_2130 | HMPREF9154_1303 | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.453 |
| guaA | polA | HMPREF9154_2130 | HMPREF9154_1906 | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.932 |
| guaA | tag | HMPREF9154_2130 | HMPREF9154_0564 | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | DNA-3-methyladenine glycosylase 1. | 0.871 |
| mutM | AFN47679.1 | HMPREF9154_1303 | HMPREF9154_2182 | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | Metal-binding domain of Ada. | 0.452 |
| mutM | guaA | HMPREF9154_1303 | HMPREF9154_2130 | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | 0.453 |
| mutM | polA | HMPREF9154_1303 | HMPREF9154_1906 | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.980 |
| mutM | tag | HMPREF9154_1303 | HMPREF9154_0564 | DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | DNA-3-methyladenine glycosylase 1. | 0.447 |
| polA | AFN47679.1 | HMPREF9154_1906 | HMPREF9154_2182 | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Metal-binding domain of Ada. | 0.927 |
| polA | guaA | HMPREF9154_1906 | HMPREF9154_2130 | DNA polymerase I, thermostable; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | GMP synthase (glutamine-hydrolyzing), C-terminal domain protein; Catalyzes the synthesis of GMP from XMP. | 0.932 |
page 1 of 2