Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AFN46883.1Transcriptional regulator, AraC family. (281 aa)    
Predicted Functional Partners:
AFN47519.1
TIGR03086 family protein.
 
    0.854
AFN46779.1
Polysaccharide biosynthesis protein.
  
     0.499
AFN47247.1
Transcriptional regulator, AraC family.
  
     0.491
AFN47643.1
Hypothetical protein.
  
     0.481
AFN46830.1
HTH domain protein.
 
    0.467
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.456
AFN45173.1
Transcriptional regulator, TetR family.
  
     0.451
AFN45484.1
Sigma-70 region 2; Belongs to the sigma-70 factor family.
  
    0.444
AFN47463.1
KR domain protein.
  
  
 0.415
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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