Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AFN45472.1Glycosyl hydrolase family 3, N-terminal domain protein. (438 aa)    
Predicted Functional Partners:
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.610
AFN46578.1
Hypothetical protein.
       0.550
AFN46598.1
Peptidase, M23 family.
 
  
 0.496
AFN46510.1
Hypothetical protein.
  
  
 0.468
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay.
  
  
 0.468
AFN46389.1
Peptidase, M23 family.
 
  
 0.462
AFN46207.1
PTS family porter, EIIC.
  
  
 0.457
AFN45955.1
Peptidase, S9A/B/C family, catalytic domain protein; Overlaps another CDS with the same product name.
     
 0.408
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
 
      0.402
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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