Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFN47839.1 | cysS | HMPREF9154_0700 | HMPREF9154_0701 | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.951 |
AFN47839.1 | pheT | HMPREF9154_0700 | HMPREF9154_2036 | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.796 |
argS | cysS | HMPREF9154_2719 | HMPREF9154_0701 | arginine--tRNA ligase. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.765 |
argS | gltX | HMPREF9154_2719 | HMPREF9154_2282 | arginine--tRNA ligase. | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.882 |
argS | leuS | HMPREF9154_2719 | HMPREF9154_2032 | arginine--tRNA ligase. | leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.949 |
argS | pheT | HMPREF9154_2719 | HMPREF9154_2036 | arginine--tRNA ligase. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.955 |
argS | serS | HMPREF9154_2719 | HMPREF9154_0337 | arginine--tRNA ligase. | serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). | 0.731 |
argS | thrS | HMPREF9154_2719 | HMPREF9154_1559 | arginine--tRNA ligase. | threonine--tRNA ligase; Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.726 |
argS | valS | HMPREF9154_2719 | HMPREF9154_1833 | arginine--tRNA ligase. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner. | 0.937 |
cysE | cysK | HMPREF9154_0931 | HMPREF9154_2131 | Serine O-acetyltransferase. | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.998 |
cysE | cysS | HMPREF9154_0931 | HMPREF9154_0701 | Serine O-acetyltransferase. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.957 |
cysK | cysE | HMPREF9154_2131 | HMPREF9154_0931 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Serine O-acetyltransferase. | 0.998 |
cysK | cysS | HMPREF9154_2131 | HMPREF9154_0701 | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.919 |
cysS | AFN47839.1 | HMPREF9154_0701 | HMPREF9154_0700 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | RNA methyltransferase, TrmH family, group 3; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. | 0.951 |
cysS | argS | HMPREF9154_0701 | HMPREF9154_2719 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | arginine--tRNA ligase. | 0.765 |
cysS | cysE | HMPREF9154_0701 | HMPREF9154_0931 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Serine O-acetyltransferase. | 0.957 |
cysS | cysK | HMPREF9154_0701 | HMPREF9154_2131 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Cysteine synthase A; Belongs to the cysteine synthase/cystathionine beta- synthase family. | 0.919 |
cysS | gltX | HMPREF9154_0701 | HMPREF9154_2282 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. | 0.788 |
cysS | leuS | HMPREF9154_0701 | HMPREF9154_2032 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.789 |
cysS | pheT | HMPREF9154_0701 | HMPREF9154_2036 | cysteine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | phenylalanine--tRNA ligase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.681 |
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