STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFN47649.1Hypothetical protein. (255 aa)    
Predicted Functional Partners:
AFN45506.1
Cold-shock DNA-binding domain protein.
 
     0.868
AFN46804.1
Permease family protein.
      0.860
AFN44928.1
Hypothetical protein.
  
     0.722
rbpA-2
Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.682
AFN44913.1
Hypothetical protein.
  
     0.678
AFN45406.1
Hypothetical protein.
  
     0.669
AFN47773.1
Hypothetical protein.
  
     0.659
AFN47412.1
YGGT family protein.
  
     0.658
AFN46481.1
Septum formation initiator.
  
     0.652
holB
DNA polymerase III, delta' subunit.
  
     0.629
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.