AFN47162.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFN47162.1

Hypothetical protein. (281 aa)

Predicted Functional Partners:

nifJ

0.937

AFN47807.1

0.858

moaC

0.852

AFN45997.1

0.843

AFN46055.1

0.839

narH

0.816

narI

0.813

narJ

0.807

AFN47804.1

0.773

AFN46994.1

0.771

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45997.1	AFN46055.1	HMPREF9154_0792	HMPREF9154_0793	ThiF family protein.	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.950
AFN45997.1	AFN46994.1	HMPREF9154_0792	HMPREF9154_0787	ThiF family protein.	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.751
AFN45997.1	AFN47162.1	HMPREF9154_0792	HMPREF9154_0795	ThiF family protein.	Hypothetical protein.	0.843
AFN45997.1	AFN47804.1	HMPREF9154_0792	HMPREF9154_0791	ThiF family protein.	Hypothetical protein.	0.818
AFN45997.1	AFN47807.1	HMPREF9154_0792	HMPREF9154_0796	ThiF family protein.	ThiS family protein.	0.996
AFN45997.1	moaC	HMPREF9154_0792	HMPREF9154_0794	ThiF family protein.	Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.	0.924
AFN45997.1	narH	HMPREF9154_0792	HMPREF9154_0788	ThiF family protein.	Nitrate reductase, beta subunit.	0.800
AFN45997.1	narI	HMPREF9154_0792	HMPREF9154_0790	ThiF family protein.	Respiratory nitrate reductase, gamma subunit.	0.799
AFN45997.1	narJ	HMPREF9154_0792	HMPREF9154_0789	ThiF family protein.	Nitrate reductase molybdenum cofactor assembly chaperone.	0.799
AFN46055.1	AFN45997.1	HMPREF9154_0793	HMPREF9154_0792	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	ThiF family protein.	0.950
AFN46055.1	AFN46994.1	HMPREF9154_0793	HMPREF9154_0787	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.856
AFN46055.1	AFN47162.1	HMPREF9154_0793	HMPREF9154_0795	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Hypothetical protein.	0.839
AFN46055.1	AFN47804.1	HMPREF9154_0793	HMPREF9154_0791	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Hypothetical protein.	0.829
AFN46055.1	AFN47807.1	HMPREF9154_0793	HMPREF9154_0796	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	ThiS family protein.	0.831
AFN46055.1	moaC	HMPREF9154_0793	HMPREF9154_0794	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Molybdenum cofactor biosynthesis protein C; Catalyzes the conversion of (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP); Belongs to the MoaC family.	0.988
AFN46055.1	narH	HMPREF9154_0793	HMPREF9154_0788	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Nitrate reductase, beta subunit.	0.836
AFN46055.1	narI	HMPREF9154_0793	HMPREF9154_0790	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Respiratory nitrate reductase, gamma subunit.	0.819
AFN46055.1	narJ	HMPREF9154_0793	HMPREF9154_0789	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	Nitrate reductase molybdenum cofactor assembly chaperone.	0.825
AFN46994.1	AFN45997.1	HMPREF9154_0787	HMPREF9154_0792	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	ThiF family protein.	0.751
AFN46994.1	AFN46055.1	HMPREF9154_0787	HMPREF9154_0793	Nitrate reductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	MoeA N-terminal region (domain I and II); Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.856