STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFN47105.1LysM domain protein. (861 aa)    
Predicted Functional Partners:
AFN45428.1
Hypothetical protein.
 
     0.914
AFN47743.1
Type II secretion system F domain protein.
 
     0.913
AFN47495.1
Hypothetical protein.
 
     0.912
AFN45503.1
SAF domain protein.
 
     0.912
AFN46859.1
Type II/IV secretion system protein.
 
     0.866
AFN46864.1
Hypothetical protein.
  
     0.771
AFN46718.1
Putative membrane protein.
  
     0.765
AFN46420.1
Hypothetical protein.
  
     0.760
AFN44922.1
Hypothetical protein.
  
     0.748
AFN46507.1
SNARE-like domain protein.
  
     0.742
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.