STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFN45851.1Hypothetical protein. (469 aa)    
Predicted Functional Partners:
AFN46534.1
Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.892
AFN45585.1
Putative twin arginine-targeting protein translocase TatB.
  
    0.783
whiB
Transcription factor WhiB domain protein; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
 
 0.486
AFN45484.1
Sigma-70 region 2; Belongs to the sigma-70 factor family.
  
 
 0.486
AFN46820.1
Sporulation and spore germination.
  
 
 0.486
AFN44939.1
RNA polymerase sigma-70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.486
AFN47692.1
Hypothetical protein.
  
 
 0.486
AFN46494.1
Transcription factor WhiB.
  
 
 0.477
AFN45881.1
Hypothetical protein.
  
 
 0.477
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.477
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.