cbiN protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

cbiN

Cobalt transport protein component CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family. (104 aa)

Predicted Functional Partners:

cbiM

0.996

cbiQ

0.995

AFN47702.1

0.992

cobJ

0.963

cbiE

0.667

cbiX_1

0.635

cobM

0.620

AFN47219.1

0.554

AFN45340.1

0.547

cobB

0.510

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45340.1	AFN47219.1	HMPREF9154_1247	HMPREF9154_1242	Hypothetical protein.	Hypothetical protein.	0.405
AFN45340.1	AFN47702.1	HMPREF9154_1247	HMPREF9154_1246	Hypothetical protein.	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.547
AFN45340.1	cbiM	HMPREF9154_1247	HMPREF9154_1243	Hypothetical protein.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.547
AFN45340.1	cbiN	HMPREF9154_1247	HMPREF9154_1244	Hypothetical protein.	Cobalt transport protein component CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.547
AFN45340.1	cbiQ	HMPREF9154_1247	HMPREF9154_1245	Hypothetical protein.	Cobalt ABC transporter, permease protein CbiQ.	0.547
AFN47219.1	AFN45340.1	HMPREF9154_1242	HMPREF9154_1247	Hypothetical protein.	Hypothetical protein.	0.405
AFN47219.1	AFN47702.1	HMPREF9154_1242	HMPREF9154_1246	Hypothetical protein.	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.554
AFN47219.1	cbiM	HMPREF9154_1242	HMPREF9154_1243	Hypothetical protein.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.554
AFN47219.1	cbiN	HMPREF9154_1242	HMPREF9154_1244	Hypothetical protein.	Cobalt transport protein component CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.554
AFN47219.1	cbiQ	HMPREF9154_1242	HMPREF9154_1245	Hypothetical protein.	Cobalt ABC transporter, permease protein CbiQ.	0.554
AFN47702.1	AFN45340.1	HMPREF9154_1246	HMPREF9154_1247	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein.	0.547
AFN47702.1	AFN47219.1	HMPREF9154_1246	HMPREF9154_1242	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Hypothetical protein.	0.554
AFN47702.1	cbiE	HMPREF9154_1246	HMPREF9154_1253	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.	0.427
AFN47702.1	cbiM	HMPREF9154_1246	HMPREF9154_1243	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.993
AFN47702.1	cbiN	HMPREF9154_1246	HMPREF9154_1244	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt transport protein component CbiN; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import; Belongs to the CbiN family.	0.992
AFN47702.1	cbiQ	HMPREF9154_1246	HMPREF9154_1245	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobalt ABC transporter, permease protein CbiQ.	0.996
AFN47702.1	cobB	HMPREF9154_1246	HMPREF9154_1256	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of hydrogenobyrinate, using either L- glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.464
AFN47702.1	cobJ	HMPREF9154_1246	HMPREF9154_0396	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	precorrin-3B C(17)-methyltransferase.	0.854
cbiE	AFN47702.1	HMPREF9154_1253	HMPREF9154_1246	Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.	Cobalt ABC transporter, ATP-binding protein; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.	0.427
cbiE	cbiM	HMPREF9154_1253	HMPREF9154_1243	Precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit.	Cobalamin biosynthesis protein CbiM; Part of the energy-coupling factor (ECF) transporter complex CbiMNOQ involved in cobalt import.	0.820

page 1 of 4

Server load: medium (46%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About