STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFN44991.1ABC transporter, ATP-binding protein. (313 aa)    
Predicted Functional Partners:
AFN45777.1
Putative membrane protein.
    0.969
AFN47454.1
Response regulator receiver domain protein.
    0.946
AFN46634.1
Histidine kinase.
    0.922
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.705
AFN46719.1
Putative membrane protein.
 
   0.652
AFN46252.1
Hypothetical protein.
 
   0.649
AFN45691.1
HD domain protein; Belongs to the dGTPase family. Type 2 subfamily.
       0.615
AFN45450.1
Transcriptional regulator, LuxR family.
  
    0.589
AFN45498.1
Histidine kinase.
  
    0.556
AFN45067.1
Response regulator receiver domain protein.
  
    0.547
Your Current Organism:
Pseudopropionibacterium propionicum
NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a
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