AFN47513.1 protein (Pseudopropionibacterium propionicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AFN47513.1

ABC transporter, solute-binding protein. (433 aa)

Predicted Functional Partners:

AFN46887.1

0.996

AFN47790.1

0.991

AFN45453.1

0.980

AFN47374.1

0.950

AFN45759.1

0.759

AFN46501.1

0.759

AFN47745.1

0.743

AFN47242.1

0.638

AFN47051.1

0.638

AFN46249.1

0.638

Your Current Organism:

Pseudopropionibacterium propionicum

NCBI taxonomy Id: 767029
Other names: P. propionicum F0230a, Propionibacterium propionicum F0230a, Pseudopropionibacterium propionicum F0230a

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFN45453.1	AFN45759.1	HMPREF9154_1467	HMPREF9154_0719	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.905
AFN45453.1	AFN46249.1	HMPREF9154_1467	HMPREF9154_1444	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.836
AFN45453.1	AFN46501.1	HMPREF9154_1467	HMPREF9154_1674	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.909
AFN45453.1	AFN46887.1	HMPREF9154_1467	HMPREF9154_1465	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.985
AFN45453.1	AFN47051.1	HMPREF9154_1467	HMPREF9154_0307	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.834
AFN45453.1	AFN47242.1	HMPREF9154_1467	HMPREF9154_0155	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.833
AFN45453.1	AFN47374.1	HMPREF9154_1467	HMPREF9154_2557	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative maltose transport system permease protein MalG.	0.978
AFN45453.1	AFN47513.1	HMPREF9154_1467	HMPREF9154_1464	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein.	0.980
AFN45453.1	AFN47745.1	HMPREF9154_1467	HMPREF9154_1676	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.948
AFN45453.1	AFN47790.1	HMPREF9154_1467	HMPREF9154_1466	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.988
AFN45759.1	AFN45453.1	HMPREF9154_0719	HMPREF9154_1467	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.	0.905
AFN45759.1	AFN46249.1	HMPREF9154_0719	HMPREF9154_1444	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.902
AFN45759.1	AFN46501.1	HMPREF9154_0719	HMPREF9154_1674	TOBE domain protein; Belongs to the ABC transporter superfamily.	TOBE domain protein; Belongs to the ABC transporter superfamily.	0.910
AFN45759.1	AFN46887.1	HMPREF9154_0719	HMPREF9154_1465	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.872
AFN45759.1	AFN47051.1	HMPREF9154_0719	HMPREF9154_0307	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.906
AFN45759.1	AFN47242.1	HMPREF9154_0719	HMPREF9154_0155	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.902
AFN45759.1	AFN47374.1	HMPREF9154_0719	HMPREF9154_2557	TOBE domain protein; Belongs to the ABC transporter superfamily.	Putative maltose transport system permease protein MalG.	0.980
AFN45759.1	AFN47513.1	HMPREF9154_0719	HMPREF9154_1464	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, solute-binding protein.	0.759
AFN45759.1	AFN47745.1	HMPREF9154_0719	HMPREF9154_1676	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.949
AFN45759.1	AFN47790.1	HMPREF9154_0719	HMPREF9154_1466	TOBE domain protein; Belongs to the ABC transporter superfamily.	ABC transporter, permease protein.	0.915